IL_8AGV_007

3D structure

PDB id

8AGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state H

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

8AGV|1|f|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGV_007 not in the Motif Atlas

Homologous match to IL_5TBW_007

Geometric discrepancy: 0.0657

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8AGV|1|f|A|123
8AGV|1|f|U|124
*
8AGV|1|f|A|144
8AGV|1|f|G|145
8AGV|1|f|U|146
8AGV|1|f|U|147
8AGV|1|f|G|148
8AGV|1|f|U|149

Current chains

Chain f

25S rRNA

Nearby chains

Chain A

60S ribosomal protein L15-A

Chain i

5.8S ribosomal RNA; 5.8S rRNA

Chain p

60S ribosomal protein L8-A