3D structure

PDB id
8AGV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast RQC complex in state H
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
GUUUG*CAUAC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8AGV_022 not in the Motif Atlas
Homologous match to IL_5TBW_022
Geometric discrepancy: 0.0748
The information below is about IL_5TBW_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_74284.1
Basepair signature
cWW-L-R-L-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

8AGV|1|f|G|680
8AGV|1|f|U|681
8AGV|1|f|U|682
8AGV|1|f|U|683
8AGV|1|f|G|684
*
8AGV|1|f|C|696
8AGV|1|f|A|697
8AGV|1|f|U|698
8AGV|1|f|A|699
8AGV|1|f|C|700

Current chains

Chain f
25S rRNA

Nearby chains

Chain A
60S ribosomal protein L15-A
Chain N
60S ribosomal protein L28
Chain l
60S ribosomal protein L4-A
Chain t
60S ribosomal protein L13-A

Coloring options:


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