IL_8AGV_035
3D structure
- PDB id
- 8AGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state H
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CA*UAG
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGV_035 not in the Motif Atlas
- Homologous match to IL_8C3A_038
- Geometric discrepancy: 0.0431
- The information below is about IL_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05035.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 38
Unit IDs
8AGV|1|f|C|969
8AGV|1|f|A|970
*
8AGV|1|f|U|1111
8AGV|1|f|A|1112
8AGV|1|f|G|1113
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L18-A
- Chain G
- 60S ribosomal protein L21-A
- Chain N
- 60S ribosomal protein L28
- Chain O
- 60S ribosomal protein L29
- Chain t
- 60S ribosomal protein L13-A
Coloring options: