IL_8AGV_055

3D structure

PDB id

8AGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state H

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8AGV|1|f|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGV_055 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.397

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8AGV|1|f|G|1234
8AGV|1|f|U|1235
8AGV|1|f|G|1236
8AGV|1|f|G|1237
8AGV|1|f|C|1238
*
8AGV|1|f|G|1250
8AGV|1|f|A|1251
8AGV|1|f|A|1252
8AGV|1|f|U|1253
8AGV|1|f|C|1254

Current chains

Chain f

25S rRNA

Nearby chains

Chain 0

60S acidic ribosomal protein P0

Chain z

60S ribosomal protein L12-B