IL_8AGV_086
3D structure
- PDB id
- 8AGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state H
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAUG*CGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGV_086 not in the Motif Atlas
- Geometric match to IL_4PDB_001
- Geometric discrepancy: 0.1774
- The information below is about IL_4PDB_001
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_36516.3
- Basepair signature
- cWW-cWW-cSH-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
8AGV|1|f|G|2206
8AGV|1|f|A|2207
8AGV|1|f|A|2208
8AGV|1|f|U|2209
8AGV|1|f|G|2210
*
8AGV|1|f|C|2235
8AGV|1|f|G|2236
8AGV|1|f|C|2237
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain a
- RQC2 isoform 1
- Chain j
- 60S ribosomal protein L2-A
- Chain v
- Eukaryotic translation initiation factor 5A-1
- Chain w
- 60S ribosomal protein L1-A
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