IL_8AGV_095
3D structure
- PDB id
- 8AGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state H
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUG*UAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGV_095 not in the Motif Atlas
- Geometric match to IL_2ZKO_001
- Geometric discrepancy: 0.2586
- The information below is about IL_2ZKO_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
8AGV|1|f|G|2435
8AGV|1|f|U|2436
8AGV|1|f|G|2437
*
8AGV|1|f|U|2510
8AGV|1|f|A|2511
8AGV|1|f|C|2512
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L15-A
- Chain V
- 60S ribosomal protein L36-A
- Chain a
- RQC2 isoform 1
- Chain p
- 60S ribosomal protein L8-A
Coloring options: