IL_8AGV_142
3D structure
- PDB id
- 8AGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state H
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CG*CUG
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGV_142 not in the Motif Atlas
- Geometric match to IL_5TBW_375
- Geometric discrepancy: 0.0831
- The information below is about IL_5TBW_375
- Detailed Annotation
- Single stack bend
- Broad Annotation
- No text annotation
- Motif group
- IL_05035.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 38
Unit IDs
8AGV|1|h|C|29
8AGV|1|h|G|30
*
8AGV|1|h|C|47
8AGV|1|h|U|48
8AGV|1|h|G|49
Current chains
- Chain h
- 5S rRNA
Nearby chains
- Chain m
- 60S ribosomal protein L5
- Chain s
- 60S ribosomal protein L11-A
Coloring options: