IL_8AGV_148

3D structure

PDB id

8AGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state H

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GU*AUC

Length

5 nucleotides

Bulged bases

8AGV|1|i|U|90

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGV_148 not in the Motif Atlas

Homologous match to IL_5TBW_146

Geometric discrepancy: 0.0954

The information below is about IL_5TBW_146

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8AGV|1|i|G|68
8AGV|1|i|U|69
*
8AGV|1|i|A|89
8AGV|1|i|U|90
8AGV|1|i|C|91

Current chains

Chain i

5.8S rRNA

Nearby chains

Chain L

60S ribosomal protein L26-A

Chain U

60S ribosomal protein L35-A

Chain Y

60S ribosomal protein L39

Chain f

Large subunit ribosomal RNA; LSU rRNA