IL_8AGW_062
3D structure
- PDB id
- 8AGW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state D
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUCAAC*GGAC
- Length
- 10 nucleotides
- Bulged bases
- 8AGW|1|f|G|1514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGW_062 not in the Motif Atlas
- Homologous match to IL_8C3A_066
- Geometric discrepancy: 0.0866
- The information below is about IL_8C3A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93630.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
8AGW|1|f|G|1500
8AGW|1|f|U|1501
8AGW|1|f|C|1502
8AGW|1|f|A|1503
8AGW|1|f|A|1504
8AGW|1|f|C|1505
*
8AGW|1|f|G|1513
8AGW|1|f|G|1514
8AGW|1|f|A|1515
8AGW|1|f|C|1516
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L17-A
- Chain E
- 60S ribosomal protein L19-A
- Chain Y
- 60S ribosomal protein L39
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