IL_8AGW_114

3D structure

PDB id

8AGW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state D

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8AGW|1|f|A|2971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGW_114 not in the Motif Atlas

Geometric match to IL_1U9S_001

Geometric discrepancy: 0.2707

The information below is about IL_1U9S_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8AGW|1|f|C|2960
8AGW|1|f|G|2961
*
8AGW|1|f|C|2970
8AGW|1|f|A|2971
8AGW|1|f|G|2972

Current chains

Chain f

25S rRNA

Nearby chains

Chain j

60S ribosomal protein L2-A

Chain r

60S ribosomal protein L10

Chain x

Transfer RNA; tRNA

Chain y

Transfer RNA; tRNA