IL_8AGW_136
3D structure
- PDB id
- 8AGW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state D
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGW_136 not in the Motif Atlas
- Geometric match to IL_4V9F_100
- Geometric discrepancy: 0.203
- The information below is about IL_4V9F_100
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.1
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 44
Unit IDs
8AGW|1|f|A|3342
8AGW|1|f|G|3343
8AGW|1|f|A|3344
8AGW|1|f|G|3345
*
8AGW|1|f|C|3360
8AGW|1|f|G|3361
8AGW|1|f|A|3362
8AGW|1|f|U|3363
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L19-A
Coloring options: