IL_8AGX_030
3D structure
- PDB id
- 8AGX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGX_030 not in the Motif Atlas
- Geometric match to IL_4WF9_024
- Geometric discrepancy: 0.0878
- The information below is about IL_4WF9_024
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
8AGX|1|f|U|834
8AGX|1|f|G|835
8AGX|1|f|A|836
8AGX|1|f|A|837
8AGX|1|f|G|838
*
8AGX|1|f|U|855
8AGX|1|f|G|856
8AGX|1|f|G|857
8AGX|1|f|A|858
8AGX|1|f|G|859
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L19-A
- Chain c
- 60S ribosomal protein L43-A
- Chain j
- 60S ribosomal protein L2-A
Coloring options: