IL_8AGX_041

3D structure

PDB id

8AGX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the IN position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGX_041 not in the Motif Atlas

Geometric match to IL_5TBW_041

Geometric discrepancy: 0.1103

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8AGX|1|f|A|1006
8AGX|1|f|U|1007
8AGX|1|f|U|1008
8AGX|1|f|A|1009
*
8AGX|1|f|U|1041
8AGX|1|f|U|1042
8AGX|1|f|C|1043
8AGX|1|f|U|1044

Current chains

Chain f

25S rRNA

Nearby chains

Chain m

60S ribosomal protein L5

Chain r

60S ribosomal protein L10