IL_8AGX_093

3D structure

PDB id

8AGX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the IN position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8AGX|1|f|A|2808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGX_093 not in the Motif Atlas

Homologous match to IL_5TBW_094

Geometric discrepancy: 0.0595

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8AGX|1|f|G|2412
8AGX|1|f|A|2413
*
8AGX|1|f|U|2807
8AGX|1|f|A|2808
8AGX|1|f|C|2809
8AGX|1|f|C|2810

Current chains

Chain f

25S rRNA

Nearby chains

Chain j

60S ribosomal protein L2-A

Chain v

Eukaryotic translation initiation factor 5A-1

Chain y

Transfer RNA; tRNA