IL_8AGX_108
3D structure
- PDB id
- 8AGX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UCAAG*CGACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGX_108 not in the Motif Atlas
- Homologous match to IL_8C3A_114
- Geometric discrepancy: 0.0982
- The information below is about IL_8C3A_114
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65585.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8AGX|1|f|U|2835
8AGX|1|f|C|2836
8AGX|1|f|A|2837
8AGX|1|f|A|2838
8AGX|1|f|G|2839
*
8AGX|1|f|C|2849
8AGX|1|f|G|2850
8AGX|1|f|A|2851
8AGX|1|f|C|2852
8AGX|1|f|A|2853
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain Z
- Ubiquitin-60S ribosomal protein L40
- Chain r
- 60S ribosomal protein L10
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