IL_8AGX_136

3D structure

PDB id

8AGX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the IN position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

8AGX|1|f|U|3341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGX_136 not in the Motif Atlas

Geometric match to IL_5TBW_134

Geometric discrepancy: 0.1598

The information below is about IL_5TBW_134

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8AGX|1|f|G|3340
8AGX|1|f|U|3341
8AGX|1|f|A|3342
*
8AGX|1|f|U|3363
8AGX|1|f|C|3364

Current chains

Chain f

25S rRNA

Nearby chains

Chain J

60S ribosomal protein L24-A