IL_8AGX_151

3D structure

PDB id

8AGX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the IN position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

8AGX|1|f|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGX_151 not in the Motif Atlas

Homologous match to IL_8P9A_290

Geometric discrepancy: 0.0903

The information below is about IL_8P9A_290

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

8AGX|1|f|U|1501
8AGX|1|f|C|1502
8AGX|1|f|A|1503
8AGX|1|f|A|1504
8AGX|1|f|C|1505
*
8AGX|1|f|G|1513
8AGX|1|f|G|1514
8AGX|1|f|A|1515

Current chains

Chain f

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L17-A

Chain E

60S ribosomal protein L19-A

Chain Y

60S ribosomal protein L39