IL_8AGZ_014
3D structure
- PDB id
- 8AGZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 8AGZ|1|f|A|398, 8AGZ|1|f|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGZ_014 not in the Motif Atlas
- Geometric match to IL_5TBW_014
- Geometric discrepancy: 0.0743
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
8AGZ|1|f|G|376
8AGZ|1|f|A|377
8AGZ|1|f|A|378
8AGZ|1|f|C|379
*
8AGZ|1|f|G|390
8AGZ|1|f|A|391
8AGZ|1|f|G|392
8AGZ|1|f|U|393
8AGZ|1|f|G|394
8AGZ|1|f|A|395
8AGZ|1|f|A|396
8AGZ|1|f|A|397
8AGZ|1|f|A|398
8AGZ|1|f|A|399
8AGZ|1|f|G|400
8AGZ|1|f|U|401
8AGZ|1|f|A|402
8AGZ|1|f|C|403
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L17-A
- Chain L
- 60S ribosomal protein L26-A
- Chain Y
- 60S ribosomal protein L39
- Chain i
- 5.8S ribosomal RNA; 5.8S rRNA
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