IL_8AGZ_155
3D structure
- PDB id
- 8AGZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGZ_155 not in the Motif Atlas
- Homologous match to IL_8P9A_338
- Geometric discrepancy: 0.0746
- The information below is about IL_8P9A_338
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07469.3
- Basepair signature
- cWW-tSH-cWW-cSH-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8AGZ|1|f|C|2889
8AGZ|1|f|A|2890
8AGZ|1|f|U|2891
8AGZ|1|f|A|2892
*
8AGZ|1|f|U|2909
8AGZ|1|f|A|2910
8AGZ|1|f|A|2911
8AGZ|1|f|G|2912
8AGZ|1|f|C|2913
8AGZ|1|f|G|2914
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L16-A
- Chain I
- 60S ribosomal protein L23-A
- Chain Z
- Ubiquitin-60S ribosomal protein L40
- Chain k
- 60S ribosomal protein L3
- Chain q
- 60S ribosomal protein L9-A
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