3D structure

PDB id
8AKN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.3 Å

Loop

Sequence
GGAGG*CGUUAC
Length
11 nucleotides
Bulged bases
8AKN|1|B|U|485
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8AKN_021 not in the Motif Atlas
Geometric match to IL_5J7L_022
Geometric discrepancy: 0.0622
The information below is about IL_5J7L_022
Detailed Annotation
tSH-tHW-tWW
Broad Annotation
No text annotation
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

8AKN|1|B|G|446
8AKN|1|B|G|447
8AKN|1|B|A|448
8AKN|1|B|G|449
8AKN|1|B|G|450
*
8AKN|1|B|C|483
8AKN|1|B|G|484
8AKN|1|B|U|485
8AKN|1|B|U|486
8AKN|1|B|A|487
8AKN|1|B|C|488

Current chains

Chain B
16S ribosomal RNA

Nearby chains

Chain E
30S ribosomal protein S4
Chain Q
30S ribosomal protein S16

Coloring options:


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