IL_8AKN_025

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8AKN|1|B|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AKN_025 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.071

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

8AKN|1|B|C|569
8AKN|1|B|G|570
8AKN|1|B|U|571
8AKN|1|B|A|572
8AKN|1|B|A|573
8AKN|1|B|A|574
8AKN|1|B|G|575
*
8AKN|1|B|C|880
8AKN|1|B|G|881

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S8

Chain M

30S ribosomal protein S12

Chain R

30S ribosomal protein S17