IL_8AKN_026

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGCAG*UCAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AKN_026 not in the Motif Atlas

Homologous match to IL_5J7L_027

Geometric discrepancy: 0.0549

The information below is about IL_5J7L_027

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8AKN|1|B|C|580
8AKN|1|B|G|581
8AKN|1|B|C|582
8AKN|1|B|A|583
8AKN|1|B|G|584
*
8AKN|1|B|U|757
8AKN|1|B|C|758
8AKN|1|B|A|759
8AKN|1|B|G|760
8AKN|1|B|G|761

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S8

Chain M

30S ribosomal protein S12

Chain P

30S ribosomal protein S15

Chain R

30S ribosomal protein S17