IL_8AKN_041

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AKN_041 not in the Motif Atlas

Homologous match to IL_6CZR_150

Geometric discrepancy: 0.2083

The information below is about IL_6CZR_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8AKN|1|B|G|953
8AKN|1|B|G|954
*
8AKN|1|B|C|1226
8AKN|1|B|A|1227
8AKN|1|B|C|1228

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S13

Chain T

30S ribosomal protein S19

Chain W

Peptide chain release factor RF1

Chain X

Transfer RNA; tRNA