IL_8AKN_045

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AKN_045 not in the Motif Atlas

Homologous match to IL_4LFB_043

Geometric discrepancy: 0.1208

The information below is about IL_4LFB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8AKN|1|B|G|1050
8AKN|1|B|C|1051
8AKN|1|B|U|1052
*
8AKN|1|B|G|1206
8AKN|1|B|2MG|1207
8AKN|1|B|C|1208

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S3

Chain O

30S ribosomal protein S14

Chain W

Peptide chain release factor RF1