IL_8AKN_048

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

8AKN|1|B|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AKN_048 not in the Motif Atlas

Homologous match to IL_4LFB_046

Geometric discrepancy: 0.1302

The information below is about IL_4LFB_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8AKN|1|B|U|1060
8AKN|1|B|G|1061
*
8AKN|1|B|C|1195
8AKN|1|B|A|1196
8AKN|1|B|A|1197

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S3

Chain F

30S ribosomal protein S5

Chain K

30S ribosomal protein S10

Chain O

30S ribosomal protein S14

Chain W

Peptide chain release factor RF1

Chain Y

mRNA