3D structure

PDB id
8AKN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.3 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8AKN_070 not in the Motif Atlas
Homologous match to IL_5J7L_250
Geometric discrepancy: 0.0483
The information below is about IL_5J7L_250
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

8AKN|1|a|G|188
8AKN|1|a|G|189
8AKN|1|a|A|190
8AKN|1|a|A|191
8AKN|1|a|C|192
8AKN|1|a|U|193
8AKN|1|a|G|194
*
8AKN|1|a|C|201
8AKN|1|a|U|202
8AKN|1|a|A|203
8AKN|1|a|A|204
8AKN|1|a|G|205
8AKN|1|a|U|206
8AKN|1|a|A|207
8AKN|1|a|C|208

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain 1
50S ribosomal protein L34
Chain 2
50S ribosomal protein L35
Chain k
50S ribosomal protein L15
Chain w
50S ribosomal protein L28

Coloring options:


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