IL_8AKN_073

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AKN_073 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3497

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8AKN|1|a|C|274
8AKN|1|a|C|275
8AKN|1|a|U|276
8AKN|1|a|G|277
8AKN|1|a|A|278
8AKN|1|a|A|279
8AKN|1|a|U|280
8AKN|1|a|C|281
*
8AKN|1|a|G|359
8AKN|1|a|U|360
8AKN|1|a|G|361
8AKN|1|a|A|362
8AKN|1|a|G|363

Current chains

Chain a

23S ribosomal RNA

Nearby chains