IL_8AKN_097
3D structure
- PDB id
- 8AKN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 8AKN|1|a|A|1156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AKN_097 not in the Motif Atlas
- Homologous match to IL_5J7L_277
- Geometric discrepancy: 0.0501
- The information below is about IL_5J7L_277
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8AKN|1|a|C|998
8AKN|1|a|U|999
8AKN|1|a|A|1000
8AKN|1|a|A|1001
8AKN|1|a|G|1002
*
8AKN|1|a|C|1153
8AKN|1|a|G|1154
8AKN|1|a|A|1155
8AKN|1|a|A|1156
8AKN|1|a|G|1157
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain p
- 50S ribosomal protein L20
- Chain q
- 50S ribosomal protein L21
- Chain y
- 50S ribosomal protein L30
Coloring options: