IL_8AKN_101

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGGAAAC*GGAAGAUGUAACGGGGC

Length

24 nucleotides

Bulged bases

8AKN|1|a|A|1127, 8AKN|1|a|U|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AKN_101 not in the Motif Atlas

Geometric match to IL_5J7L_281

Geometric discrepancy: 0.0682

The information below is about IL_5J7L_281

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.3

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

8AKN|1|a|G|1024
8AKN|1|a|G|1025
8AKN|1|a|G|1026
8AKN|1|a|A|1027
8AKN|1|a|A|1028
8AKN|1|a|A|1029
8AKN|1|a|C|1030
*
8AKN|1|a|G|1124
8AKN|1|a|G|1125
8AKN|1|a|A|1126
8AKN|1|a|A|1127
8AKN|1|a|G|1128
8AKN|1|a|A|1129
8AKN|1|a|U|1130
8AKN|1|a|G|1131
8AKN|1|a|U|1132
8AKN|1|a|A|1133
8AKN|1|a|A|1134
8AKN|1|a|C|1135
8AKN|1|a|G|1136
8AKN|1|a|G|1137
8AKN|1|a|G|1138
8AKN|1|a|G|1139
8AKN|1|a|C|1140

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13

Chain l

50S ribosomal protein L16