IL_8AKN_113

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UG*CAUCAG

Length

8 nucleotides

Bulged bases

8AKN|1|a|U|1584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AKN_113 not in the Motif Atlas

Homologous match to IL_5J7L_294

Geometric discrepancy: 0.221

The information below is about IL_5J7L_294

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87211.1

Basepair signature

cWW-cSW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

8AKN|1|a|U|1415
8AKN|1|a|G|1416
*
8AKN|1|a|C|1582
8AKN|1|a|A|1583
8AKN|1|a|U|1584
8AKN|1|a|C|1585
8AKN|1|a|A|1586
8AKN|1|a|G|1587

Current chains

Chain a

23S ribosomal RNA

Nearby chains