IL_8AKN_127

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8AKN|1|a|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AKN_127 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0521

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8AKN|1|a|C|1686
8AKN|1|a|G|1687
8AKN|1|a|U|1688
8AKN|1|a|A|1689
8AKN|1|a|A|1690
8AKN|1|a|C|1691
*
8AKN|1|a|G|1696
8AKN|1|a|G|1697
8AKN|1|a|A|1698
8AKN|1|a|G|1699
8AKN|1|a|A|1700
8AKN|1|a|A|1701
8AKN|1|a|G|1702

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain B

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2