3D structure

PDB id
8AKN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.3 Å

Loop

Sequence
GU(G7M)A*UCC
Length
7 nucleotides
Bulged bases
8AKN|1|a|U|2068
QA status
Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8AKN_141 not in the Motif Atlas
Homologous match to IL_5J7L_323
Geometric discrepancy: 0.1021
The information below is about IL_5J7L_323
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8AKN|1|a|G|2067
8AKN|1|a|U|2068
8AKN|1|a|G7M|2069
8AKN|1|a|A|2070
*
8AKN|1|a|U|2441
8AKN|1|a|C|2442
8AKN|1|a|C|2443

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain A
Drosocin1
Chain e
50S ribosomal protein L4
Chain k
50S ribosomal protein L15

Coloring options:


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