IL_8AKN_170

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CG*UAG

Length

5 nucleotides

Bulged bases

8AKN|1|b|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AKN_170 not in the Motif Atlas

Homologous match to IL_7RQB_111

Geometric discrepancy: 0.2593

The information below is about IL_7RQB_111

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

8AKN|1|b|C|17
8AKN|1|b|G|18
*
8AKN|1|b|U|65
8AKN|1|b|A|66
8AKN|1|b|G|67

Current chains

Chain b

5S ribosomal RNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA