IL_8AKN_176

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAAGU*AUGUGCCUUCGGGAAC

Length

21 nucleotides

Bulged bases

8AKN|1|B|U|1030, 8AKN|1|B|C|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8AKN|1|B|G|1003
8AKN|1|B|A|1004
8AKN|1|B|A|1005
8AKN|1|B|G|1006
8AKN|1|B|U|1007
*
8AKN|1|B|A|1022
8AKN|1|B|U|1023
8AKN|1|B|G|1024
8AKN|1|B|U|1025
8AKN|1|B|G|1026
8AKN|1|B|C|1027
8AKN|1|B|C|1028
8AKN|1|B|U|1029
8AKN|1|B|U|1030
8AKN|1|B|C|1031
8AKN|1|B|G|1032
8AKN|1|B|G|1033
8AKN|1|B|G|1034
8AKN|1|B|A|1035
8AKN|1|B|A|1036
8AKN|1|B|C|1037

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain O

30S ribosomal protein S14