IL_8AKN_178

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GU(5MC)*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AKN_178 not in the Motif Atlas

Homologous match to IL_5J7L_363

Geometric discrepancy: 0.076

The information below is about IL_5J7L_363

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8AKN|1|B|G|1405
8AKN|1|B|U|1406
8AKN|1|B|5MC|1407
*
8AKN|1|B|G|1494
8AKN|1|B|U|1495
8AKN|1|B|C|1496

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain W

Peptide chain release factor RF1

Chain Y

mRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA