IL_8AKN_179

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

8AKN|1|B|A|1492, 8AKN|1|B|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AKN_179 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.1859

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8AKN|1|B|5MC|1407
8AKN|1|B|A|1408
8AKN|1|B|C|1409
*
8AKN|1|B|G|1491
8AKN|1|B|A|1492
8AKN|1|B|A|1493
8AKN|1|B|G|1494

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S12

Chain W

Peptide chain release factor RF1

Chain Y

mRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA