IL_8AM9_024

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8AM9|1|B|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AM9_024 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0854

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

8AM9|1|B|C|569
8AM9|1|B|G|570
8AM9|1|B|U|571
8AM9|1|B|A|572
8AM9|1|B|A|573
8AM9|1|B|A|574
8AM9|1|B|G|575
*
8AM9|1|B|C|880
8AM9|1|B|G|881

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S12

Chain R

30S ribosomal protein S17