IL_8AM9_029

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AM9_029 not in the Motif Atlas

Homologous match to IL_4LFB_027

Geometric discrepancy: 0.0854

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

8AM9|1|B|G|654
8AM9|1|B|A|655
*
8AM9|1|B|U|751
8AM9|1|B|G|752
8AM9|1|B|A|753
8AM9|1|B|C|754

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S8

Chain P

30S ribosomal protein S15