IL_8AM9_046
3D structure
- PDB id
- 8AM9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UG*CAA
- Length
- 5 nucleotides
- Bulged bases
- 8AM9|1|B|A|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AM9_046 not in the Motif Atlas
- Homologous match to IL_5J7L_049
- Geometric discrepancy: 0.1204
- The information below is about IL_5J7L_049
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 132
Unit IDs
8AM9|1|B|U|1060
8AM9|1|B|G|1061
*
8AM9|1|B|C|1195
8AM9|1|B|A|1196
8AM9|1|B|A|1197
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain 8
- Transfer RNA; tRNA
- Chain D
- 30S ribosomal protein S3
- Chain F
- 30S ribosomal protein S5
- Chain K
- 30S ribosomal protein S10
- Chain O
- 30S ribosomal protein S14
- Chain X
- mRNA
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