IL_8AM9_061

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

8AM9|1|B|A|1441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AM9_061 not in the Motif Atlas

Geometric match to IL_5J7L_302

Geometric discrepancy: 0.3697

The information below is about IL_5J7L_302

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8AM9|1|B|U|1440
8AM9|1|B|A|1441
8AM9|1|B|G|1442
*
8AM9|1|B|C|1460
8AM9|1|B|G|1461

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain U

30S ribosomal protein S20

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain o

50S ribosomal protein L19