IL_8AM9_073
3D structure
- PDB id
- 8AM9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 8AM9|1|a|A|504, 8AM9|1|a|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AM9_073 not in the Motif Atlas
- Geometric match to IL_5J7L_255
- Geometric discrepancy: 0.0629
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
8AM9|1|a|G|481
8AM9|1|a|A|482
8AM9|1|a|A|483
8AM9|1|a|C|484
*
8AM9|1|a|G|496
8AM9|1|a|A|497
8AM9|1|a|G|498
8AM9|1|a|U|499
8AM9|1|a|G|500
8AM9|1|a|A|501
8AM9|1|a|A|502
8AM9|1|a|A|503
8AM9|1|a|A|504
8AM9|1|a|A|505
8AM9|1|a|G|506
8AM9|1|a|A|507
8AM9|1|a|A|508
8AM9|1|a|C|509
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain r
- 50S ribosomal protein L22
- Chain t
- 50S ribosomal protein L24
Coloring options: