IL_8AM9_080

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UU*GGA

Length

5 nucleotides

Bulged bases

8AM9|1|a|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AM9_080 not in the Motif Atlas

Homologous match to IL_5J7L_262

Geometric discrepancy: 0.0433

The information below is about IL_5J7L_262

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8AM9|1|a|U|702
8AM9|1|a|U|703
*
8AM9|1|a|G|728
8AM9|1|a|G|729
8AM9|1|a|A|730

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2