IL_8AM9_098
3D structure
- PDB id
- 8AM9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 8AM9|1|a|A|1127, 8AM9|1|a|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AM9_098 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.0783
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
8AM9|1|a|G|1024
8AM9|1|a|G|1025
8AM9|1|a|G|1026
8AM9|1|a|A|1027
8AM9|1|a|A|1028
8AM9|1|a|A|1029
8AM9|1|a|C|1030
*
8AM9|1|a|G|1124
8AM9|1|a|G|1125
8AM9|1|a|A|1126
8AM9|1|a|A|1127
8AM9|1|a|G|1128
8AM9|1|a|A|1129
8AM9|1|a|U|1130
8AM9|1|a|G|1131
8AM9|1|a|U|1132
8AM9|1|a|A|1133
8AM9|1|a|A|1134
8AM9|1|a|C|1135
8AM9|1|a|G|1136
8AM9|1|a|G|1137
8AM9|1|a|G|1138
8AM9|1|a|G|1139
8AM9|1|a|C|1140
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L36
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain d
- 50S ribosomal protein L3
- Chain i
- 50S ribosomal protein L13
- Chain l
- 50S ribosomal protein L16
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