IL_8AM9_144

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AM9_144 not in the Motif Atlas

Homologous match to IL_7RQB_090

Geometric discrepancy: 0.5806

The information below is about IL_7RQB_090

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_27635.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

8AM9|1|a|U|2401
8AM9|1|a|U|2402
8AM9|1|a|C|2403
*
8AM9|1|a|G|2414
8AM9|1|a|G|2415

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L33

Chain 2

50S ribosomal protein L35

Chain k

50S ribosomal protein L15