IL_8AM9_149

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGG*C(PSU)GG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AM9_149 not in the Motif Atlas

Homologous match to IL_5J7L_339

Geometric discrepancy: 0.1216

The information below is about IL_5J7L_339

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8AM9|1|a|C|2507
8AM9|1|a|G|2508
8AM9|1|a|G|2509
*
8AM9|1|a|C|2579
8AM9|1|a|PSU|2580
8AM9|1|a|G|2581
8AM9|1|a|G|2582

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain A

Drosocin1

Chain d

50S ribosomal protein L3