3D structure

PDB id
8ANA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GCAAG*CAACC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8ANA_030 not in the Motif Atlas
Geometric match to IL_4WFL_001
Geometric discrepancy: 0.1725
The information below is about IL_4WFL_001
Detailed Annotation
Double sheared with non-canonical cWW
Broad Annotation
Double sheared
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

8ANA|1|a|G|875
8ANA|1|a|C|876
8ANA|1|a|A|877
8ANA|1|a|A|878
8ANA|1|a|G|879
*
8ANA|1|a|C|898
8ANA|1|a|A|899
8ANA|1|a|A|900
8ANA|1|a|C|901
8ANA|1|a|C|902

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain l
50S ribosomal protein L16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.196 s