IL_8ANA_061

3D structure

PDB id

8ANA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8ANA|1|a|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ANA_061 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.0661

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8ANA|1|a|C|1686
8ANA|1|a|G|1687
8ANA|1|a|U|1688
8ANA|1|a|A|1689
8ANA|1|a|A|1690
8ANA|1|a|C|1691
*
8ANA|1|a|G|1696
8ANA|1|a|G|1697
8ANA|1|a|A|1698
8ANA|1|a|G|1699
8ANA|1|a|A|1700
8ANA|1|a|A|1701
8ANA|1|a|G|1702

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2