3D structure

PDB id
8ANA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CGAAA(5MU)UCCUUG*C(5MC)UG
Length
16 nucleotides
Bulged bases
8ANA|1|a|A|1938, 8ANA|1|a|U|1944
QA status
Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8ANA_071 not in the Motif Atlas
Geometric match to IL_7A0S_072
Geometric discrepancy: 0.1457
The information below is about IL_7A0S_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04332.3
Basepair signature
cWW-L-R-L-cWW-L-L-R-L-R-L
Number of instances in this motif group
2

Unit IDs

8ANA|1|a|C|1934
8ANA|1|a|G|1935
8ANA|1|a|A|1936
8ANA|1|a|A|1937
8ANA|1|a|A|1938
8ANA|1|a|5MU|1939
8ANA|1|a|U|1940
8ANA|1|a|C|1941
8ANA|1|a|C|1942
8ANA|1|a|U|1943
8ANA|1|a|U|1944
8ANA|1|a|G|1945
*
8ANA|1|a|C|1961
8ANA|1|a|5MC|1962
8ANA|1|a|U|1963
8ANA|1|a|G|1964

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain c
50S ribosomal protein L2

Coloring options:


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