IL_8ANY_008

3D structure

PDB id

8ANY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ANY_008 not in the Motif Atlas

Geometric match to IL_5TBW_079

Geometric discrepancy: 0.1189

The information below is about IL_5TBW_079

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8ANY|1|A|G|1913
8ANY|1|A|A|1914
8ANY|1|A|C|1915
*
8ANY|1|A|G|2004
8ANY|1|A|C|2005
8ANY|1|A|C|2006

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain F

39S ribosomal protein L4, mitochondrial

Chain d

39S ribosomal protein L45, mitochondrial