IL_8ANY_096

3D structure

PDB id

8ANY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ANY_096 not in the Motif Atlas

Geometric match to IL_5VCI_002

Geometric discrepancy: 0.1436

The information below is about IL_5VCI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

8ANY|1|AA|G|1489
8ANY|1|AA|U|1490
8ANY|1|AA|C|1491
*
8ANY|1|AA|G|1559
8ANY|1|AA|U|1560
8ANY|1|AA|C|1561

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain 8

39S ribosomal protein L40, mitochondrial

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain A3

Aurora kinase A-interacting protein

Chain Aw

A/A-tRNA

Chain Az

mRNA